2025

2024

• Kopecký M., Hederová L., Macek M., Klinerová T. & Wild J. (2024) Forest plant indicator values for moisture reflect atmospheric vapour pressure deficit rather than soil water content. New Phytologist 244: 1801–1811. https://doi.org/10.1111/nph.20068
• Brůna J., Macek M., Klinerová T., Hederová L., Růžičková A. & Kopecký M. (2024) Disturbance effects on mountain spruce forest microclimates. Silva Gabreta 30: 141–160. https://www.npsumava.cz/wp-content/uploads/2024/11/bruna_web.pdf
• Moreno-García P., Montaño-Centellas F., Liu Y., Reyes-Mendez E.Y., Jha R.R., Guralnick R.P., Folk R., Waller D.M., Verheyen K., Baeten L., Becker-Scarpitta A., Berki I., Bernhardt-Römermann M., Brunet J., Van Calster H., Chudomelová M., Closset D., De Frenne P., Decocq G., Gilliam F.S., Grytnes J.-A., Hédl R., Heinken T., Jaroszewicz B., Kopecký M., Lenoir J., Macek M., Máliš F., Naaf T., Orczewska A., Petřík P., Reczyńska K., Schei F.H., Schmidt W., Stachurska-Swakoń A., Standovár T., Świerkosz K., Teleki B., Vild O. & Li D. (2024) Long-term nitrogen deposition reduces the diversity of nitrogen-fixing plants. Science Advances 10: eadp7953. https://doi.org/10.1126/sciadv.adp7953
• Sohar K., Altman J., Kopecký M., Pejcha V., Rai S., Fibich P. & Doležal J. (2024) Elevational variations in climate warming impacts on West Himalayan fir growth. Climate Dynamics 9505–9518. https://doi.org/10.1007/s00382-024-07409-6
• Sanczuk P., Verheyen K., Lenoir J., Zellweger F., Lembrechts J.J., Rodríguez-Sánchez F., Baeten L., Bernhardt-Römermann M., De Pauw K., Vangansbeke P., Perring M.P., Berki I., Bjorkman A.D., Brunet J., Chudomelová M., De Lombaerde E., Decocq G., Dirnböck T., Durak T., Greiser C., Hédl R., Heinken T., Jandt U., Jaroszewicz B., Kopecký M., Landuyt D., Macek M., Máliš F., Naaf T., Nagel T.A., Petřík P., Reczyńska K., Schmidt W., Standovár T., Staude I.R., Świerkosz K., Teleki B., Vanneste T., Vild O., Waller D. & De Frenne P. (2024) Unexpected westward range shifts in European forest plants link to nitrogen deposition. Science 386: 193–198. https://doi.org/10.1126/science.ado0878
• Moudrý V., Gábor L., Marselis S., Pracná P., Barták V., Prošek J., Navrátilová B., Novotný J., Potůčková M., Gdulová K., Crespo-Peremarch P., Komárek J., Malavasi M., Rocchini D., Ruiz L.A., Torralba J.,  Torresani M., Cazzolla Gatti R. & Wild J. (2024) Comparison of three global canopy height maps and their applicability to biodiversity modeling: Accuracy issues revealed. Ecosphere 15(10): 1-18. http://DOI: 10.1002/ecs2.70026
• Novotný P., Wild J. (2024) The relational modeling of hierarchical data in biodiversity databases. Database, Vol. 2024: article ID baae 107. https://doi.org/10.1093/database/baae107
• Moudrý V., Bazzichetto M., Remelgado R., Devillers R., Lenoir J., Mateo R.G., Lembrechts J.J., Sillero N., Lecours V., Cord A.F., Barták V., Balej P., Rocchini D., Torresani M., Arenas-Castro S., Man M., Prajzlerová D., Gdulová K., Prošek J., Marchetto E., Zarzo-Arias A., Gábor L., Leroy F., Martini M., Malavasi M., Cazzolla Gatti R., Wild J. & Šímová P. (2024) Optimising occurrence data in species distribution models: sample size, positional uncertainty, and sampling bias matter. Ecography: 1-20.https://doi.org/10.1111/ecog.07294
• Hof A.R., Mina M., Mairota P., Aguilar F., Leitinger G., Brůna J., Koivula M., Klopčič M., Sjögren J. & Vacchiano G. (2024) A perspective on the need for integrated frameworks linking species distribution and dynamic forest landscape models across spatial scales. Frontiers in Ecology and Evolution 12: 1–10. https://doi.org/10.3389/fevo.2024.1112712
• Klinges D.H., Baecher J.A., Lembrechts J.J., Maclean I.M.D., Lenoir J., Greiser C., Ashcroft M., Evans L.J., Kearney M.R., Aalto J., Barrio I.C., De Frenne P., Guillemot J., Hylander K., Jucker T., Kopecký M., Luoto M., Macek M., Nijs I., Urban J., van den Brink L., Vangansbeke P., Von Oppen J., Wild J., Boike J., Canessa R., Nosetto M., Rubtsov A., Sallo‐Bravo J. & Scheffers B.R. (2024) Proximal microclimate: Moving beyond spatiotemporal resolution improves ecological predictions. Global Ecology and Biogeography 1–16. https://doi.org/10.1111/geb.13884
• Wen B., Blondeel H., Baeten L., Perring M.P., Depauw L., Maes S.L., De Keersmaeker L., Van Calster H., Wulf M., Naaf T., Kirby K., Bernhardt-Römermann M., Dirnböck T., Máliš F., Kopecký M., Vild O., Macek M., Hédl R., Chudomelová M., Lenoir J., Brunet J., Nagel T.A., Verheyen K. & Landuyt D. (2024) Predicting trajectories of temperate forest understorey vegetation responses to global change. Forest Ecology and Management 566: 122091. doi.org/10.1016/j.foreco.2024.122091
• Kemppinen J., Lembrechts J.J., Van Meerbeek K., Carnicer J., Chardon N.I., Kardol P., Lenoir J., Liu D., Maclean I., Pergl J., Saccone P., Senior R.A., Shen T., Słowińska S., Vandvik V., von Oppen J., Aalto J., Ayalew B., Bates O., Bertelsmeier C., Bertrand R., Beugnon R., Borderieux J., Brůna J., Buckley L., Bujan J., Casanova‐Katny A., Christiansen D.M., Collart F., De Lombaerde E., De Pauw K., Depauw L., Di Musciano M., Díaz Borrego R., Díaz‐Calafat J., Ellis‐Soto D., Esteban R., de Jong G.F., Gallois E., Garcia M.B., Gillerot L., Greiser C., Gril E., Haesen S., Hampe A., Hedwall P., Hes G., Hespanhol H., Hoffrén R., Hylander K., Jiménez‐Alfaro B., Jucker T., Klinges D., Kolstela J., Kopecký M., Kovács B., Maeda E.E., Máliš F., Man M., Mathiak C., Meineri E., Naujokaitis‐Lewis I., Nijs I., Normand S., Nuñez M., Orczewska A., Peña‐Aguilera P., Pincebourde S., Plichta R., Quick S., Renault D., Ricci L., Rissanen T., Segura‐Hernández L., Selvi F., Serra‐Diaz J.M., Soifer L., Spicher F., Svenning J., Tamian A., Thomaes A., Thoonen M., Trew B., Van de Vondel S., van den Brink L., Vangansbeke P., Verdonck S., Vitkova M., Vives‐Ingla M., von Schmalensee L., Wang R., Wild J., Williamson J., Zellweger F., Zhou X., Zuza E.J. & De Frenne P. (2024) Microclimate, an important part of ecology and biogeography. Global Ecology and Biogeography https://doi.org/10.1111/geb.13834
• Doležal J., Chondol T., Chlumská Z., Altman J., Čapková K., Dvorský M., Fibich P., Korznikov K.A., Ruka A.T., Kopecký M., Macek M. & Řeháková K. (2024) Contrasting biomass allocations explain adaptations to cold and drought in the world’s highest-growing angiosperms. Annals of Botany 134: 401–414. https://doi.org/10.1093/aob/mcae028
• Díaz‐Yáñez O., Käber Y., Anders T., Bohn F., Braziunas K.H., Brůna J., Fischer R., Fischer S.M., Hetzer J., Hickler T., Hochauer C., Lexer M.J., Lischke H., Mairota P., Merganič J., Merganičová K., Mette T., Mina M., Morin X., Nieberg M., Rammer W., Reyer C.P.O., Scheiter S., Scherrer D. & Bugmann H. (2024) Tree regeneration in models of forest dynamics: A key priority for further research. Ecosphere 15: 1–25. https://doi.org/10.1002/ecs2.4807
• Klinkovská K., Glaser M., Danihelka J., Kaplan Z., Knollová I., Novotný P., Pyšek P., Řezníčková M., Wild J., Chytrý M. (2024) Dynamics of the Czech flora over the last 60 years: Winners, losers and causes of changes. Biological Conservation 292, 110502. https://doi.org/10.1016/j.biocon.2024.110502 
• Meyerson L.A., Cronin J.T., Lučanová M., Lambertini C., Brix H., Packer J.G., Čuda J., Wild J., Pergl J., Pyšek P. (2024) Some like it hot: small genomes may be more prevalent under climate extremes. Biol Invasions. https://doi.org/10.1007/s10530-024-03253-1
• Ismaeel A., Tai A.P.K., Santos E.G., Maraia H., Aalto I., Altman J., Doležal J., Lembrechts J.J., Camargo J.L., Aalto J., Sam K., Avelino do Nascimento L.C., Kopecký M., Svátek M., Nunes M.H., Matula R., Plichta R., Abera T. & Maeda E.E. (2024) Patterns of tropical forest understory temperatures. Nature Communications 15: 549. https://doi.org/10.1038/s41467-024-44734-0
• Cerioni M., Brabec M., Bače R., Bāders E., Bončina A., Brůna J., Chećko E., Cordonnier T., de Koning J.H.C., Diaci J., Dobrowolska D., Dountchev A., Engelhart J., Fidej G., Fuhr M., Garbarino M., Jansons Ā., Keren S., Kitenberga M., Klopčič M., Konôpka B., Kopecký M., Köster K., Kucbel S., Lacombe E., Laurent L., Leyman A., Lingua E., Macek M., Maciejewski Z., Malandra F., Marzano R., Metslaid M., Morresi D., Panayotov M., Pawlak B., Pittner J., Šebeň V., Socha J., Svoboda M., Szwagrzyk J., Tsvetanov N., Urbinati C., Vallet P., Van de Kerckhove P., Vandekerkhove K., Vencurik J., Vitali A., Vodde F., Wild J. & Nagel T.A. (2024) Recovery and resilience of European temperate forests after large and severe disturbances. Global Change Biology 30: 1–18. https://doi.org/10.1111/gcb.17159
• Vild O., Chudomelová M., Macek M., Kopecký M., Prach J., Petřík P., Halas P., Juříček M., Smyčková M., Šebesta J., Vojík M. & Hédl R. (2024) Long‐term shift towards shady and nutrient‐rich habitats in Central European temperate forests. New Phytologist https://doi.org/10.1111/nph.19587
• Padullés Cubino J., Lenoir J., Li D., Montaño‐Centellas F.A., Retana J., Baeten L., Bernhardt‐Römermann M., Chudomelová M., Closset D., Decocq G., De Frenne P., Diekmann M., Dirnböck T., Durak T., Hédl R., Heinken T., Jaroszewicz B., Kopecký M., Macek M., Máliš F., Naaf T., Orczewska A., Petřík P., Pielech R., Reczyńska K., Schmidt W., Standovár T., Świerkosz K., Teleki B., Verheyen K., Vild O., Waller D., Wulf M. & Chytrý M. (2024) Evaluating plant lineage losses and gains in temperate forest understories: a phylogenetic perspective on climate change and nitrogen deposition. New Phytologist https://doi.org/10.1111/nph.19477
• Landuyt D., Perring M.P., Blondeel H., De Lombaerde E., Depauw L., Lorer E., Maes S.L., Baeten L., Bergès L., Bernhardt‐Römermann M., Brūmelis G., Brunet J., Chudomelová M., Czerepko J., Decocq G., den Ouden J., De Frenne P., Dirnböck T., Durak T., Fichtner A., Gawryś R., Härdtle W., Hédl R., Heinrichs S., Heinken T., Jaroszewicz B., Kirby K., Kopecký M., Máliš F., Macek M., Mitchell F.J.G., Naaf T., Petřík P., Reczyńska K., Schmidt W., Standovár T., Swierkosz K., Smart S.M., Van Calster H., Vild O., Waller D.M., Wulf M. & Verheyen K. (2024) Combining multiple investigative approaches to unravel functional responses to global change in the understorey of temperate forests. Global Change Biology 30: https://doi.org/10.1111/gcb.17086
• Greiser C., Hederová L., Vico G., Wild J., Macek M. & Kopecký M. (2024) Higher soil moisture increases microclimate temperature buffering in temperate broadleaf forests. Agricultural and Forest Meteorology 345: 109828. https://doi.org/10.1016/j.agrformet.2023.109828

2023

• Rai S., Altman J., Kopecký M., Pejcha V., Svoboda M. & Doležal J. (2023) Global warming alters Himalayan hemlock’s climate sensitivity and growth dynamics. Climate Dynamics https://doi.org/10.1007/s00382-023-07026-9
• Rai S., Altman J., Kopecký M., Sohar K., Fibich P., Pejcha V. & Doležal J. (2023) Contrasting impacts of climate warming on Himalayan Hemlock growth: Seasonal and elevational variations. Dendrochronologia 82: 126144. https://doi.org/10.1016/j.dendro.2023.126144
• Haesen S., Lenoir J., Gril E., De Frenne P., Lembrechts J.J., Kopecký M., Macek M., Man M., Wild J. & Van Meerbeek K. (2023) Microclimate reveals the true thermal niche of forest plant species. Ecology Letters.  https://doi.org/10.1111/ele.14312
• Abraham V., Macek M., Tkáč P., Novák D., Pokorný P., Kozáková R., Jamrichová E., Soukupová M.G. & Kolář J. (2023) Pollen anthropogenic indicators revisited using large-scale pollen and archaeological datasets: 12,000 years of human-vegetation interactions in central Europe. Preslia 95: 385–411. https://doi.org/10.23855/preslia.2023.385
• Rybar J., Bosela M., Marcis P., Ujházyová M., Polťák D., Hederová L. & Ujházy K. (2023) Effects of tree canopy on herbaceous understorey throughout the developmental cycle of a temperate mountain primary forest. Forest Ecology and Management 546: 121353. https://doi.org/10.1016/j.foreco.2023.121353
• Máliš F., Ujházy K., Hederová L., Ujházyová M., Csölleová L., Coomes D. A. & Zellweger F. (2023) Microclimate variation and recovery time in managed and old-growth temperate forests. Agricultural and Forest Meteorology 342: 109722. https://doi.org/10.1016/j.agrformet.2023.109722
• Man M., Kalčík V., Macek M., Brůna J., Hederová L., Wild J. & Kopecký M. (2023) myClim: Microclimate data handling and standardised analyses in R. Methods in Ecology and Evolution 14: 2308–2320. https://doi.org/10.1111/2041-210X.14192 PDF
• Hiiesalu I., Schweichhart J., Angel R., Davison J., Doležal J., Kopecký M., Macek M. & Řehakova K. (2023) Plant-symbiotic fungal diversity tracks variation in vegetation and the abiotic environment along an extended elevational gradient in the Himalayas. FEMS Microbiology Ecology 99: 1–13. https://doi.org/10.1093/femsec/fiad092
• Kupková L., Červená L., Potůčková M., Lysák J., Roubalová M., Hrázský Z., Březina S., Epstein H.E. & Müllerová J. (2023) Towards reliable monitoring of grass species in nature conservation: Evaluation of the potential of UAV and PlanetScope multi-temporal data in the Central European tundra. Remote Sensing of Environment 294: 113645. https://doi.org/10.1016/j.rse.2023.113645
• Müllerová J., Bartaloš T., Gago X., Kent R., Michez A., Mokroš M., Mücher S. & Paulus G. (2023) Chapter 4 – Vegetation mapping and monitoring by unmanned aerial systems (UAS)—current state and perspectives. Unmanned Aerial Systems for Monitoring Soil, Vegetation, and Riverine Environments Earth Observation. (ed. by S. Manfreda) and E. Ben Dor), pp. 93–124. Elsevier.
• Chondol T., Klimeš A., Altman J., Čapková K., Dvorský M., Hiiesalu I., Jandová V., Kopecký M., Macek M., Řeháková K., Liancourt P. & Doležal J. (2023) Habitat preferences and functional traits drive longevity in Himalayan high‐mountain plants. Oikos e10073. https://doi.org/10.1111/oik.10073
• Radoměřský T., Bobek P., Man M., Svitavská Svobodová H. & Kuneš P. (2023) Modelling the location of interglacial microrefugia for cold-adapted species. Preslia 95: 267–296. https://doi.org/10.23855/preslia.2023.267
• Perrone M., Di Febbraro M., Conti L., Divíšek J., Chytrý M., Keil P., Carranza M. L., Rocchini D., Torresani M., Moudrý V.,  Šímová P., Prajzlerová D., Müllerová J., Wild J. & Malavasi M. (2023) The relationship between spectral and plant diversity: Disentangling the influence of metrics and habitat types at the landscape scale. Remote Sensing of Environment 293: 113591. https://doi.org/10.1016/j.rse.2023.113591
• Chianucci F. & Macek M. (2023). hemispheR: an R package for fisheye canopy image analysis. Agricultural and Forest Meteorology, 336: 109470. https://doi.org/10.1016/j.agrformet.2023.109470
• Abraham V., Man M., Theuerkauf M., Pokorný P., Bobek P. & Novák J. (2023) Spatially explicit, quantitative reconstruction of past vegetation based on pollen or charcoal data as a tool for autecology of trees. Landscape Ecology. https://doi.org/10.1007/s10980-023-01652-8
• Haesen S., Lembrechts J.J., De Frenne P., Lenoir J., Aalto J., Ashcroft M.B., Kopecký M., Luoto M., Maclean I., Nijs I., Niittynen P., van den Hoogen J., Arriga N., Brůna J., Buchmann N., Čiliak M., Collalti A., De Lombaerde E., Descombes P., Gharun M., Goded I., Govaert S., Greiser C., Grelle A., Gruening C., Hederová L., Hylander K., Kreyling J., Kruijt B., Macek M., Máliš F., Man M., Manca G., Matula R., Meeussen C., Merinero S., Minerbi S., Montagnani L., Muffler L., Ogaya R., Penuelas J., Plichta R., Portillo‐Estrada M., Schmeddes J., Shekhar A., Spicher F., Ujházyová M., Vangansbeke P., Weigel R., Wild J., Zellweger F. & Van Meerbeek K. (2023) ForestClim —Bioclimatic variables for microclimate temperatures of European forests. Global Change Biology 29: 2886-2892. https://doi.org/10.1111/gcb.16678
• Kaplan Z., Danihelka J., Šumberová K., Prančl J., Velebil J., Dřevojan P., Ducháček M., Businský R., Řepka R., Maděra P., Galušková H., Wild J. & Brůna J. (2023) Distributions of vascular plants in the Czech Republic. Part 12. Preslia 95: 1–118. https://doi.org/10.23855/preslia.2023.001
• Moudrý V., Keil P., Cord A. F., Gábor L., Lecours V., Zarzo-Arias A., Barták V., Malavasi M., Rocchini D., Torresani M., Gdulová K., Grattarola F., Leroy F., Marchetto E., Thouverai E., Prošek J., Wild J., & Šímová P. (2023) Scale mismatches between predictor and response variables in species distribution modelling: A review of practices for appropriate grain selection. Progress in Physical Geography: Earth and Environment, 0(0). https://doi.org/10.1177/03091333231156362
• Klinerová T., Man M. & Dostál P. (2023) Invasion tolerance varies along a topographic gradient irrespective of invader presence. Oikos 1–15. https://doi.org/10.1111/oik.09430
• Hederová L., Macek M., Wild J., Brůna J., Kašpar V., Klinerová T. & Kopecký M. (2023) Ecologically relevant canopy openness from hemispherical photographs. Agricultural and Forest Meteorology 330: 109308. https://doi.org/10.1016/j.agrformet.2023.109308
• Macek M., Abraham V., Tkáč P., Novák D. & Kolář J. (2023) The diversity and distribution of introduced plant species reflect 8000 years of settlement history. Journal of Ecology 111:787-798. https://doi.org/10.1111/1365-2745.14060
• Moudrý V., Cord A.F., Gábor L., Laurin G.V., Barták V., Gdulová K., Malavasi M., Rocchini D., Stereńczak K., Prošek J., Klápště P. & Wild J. (2023) Vegetation structure derived from airborne laser scanning to assess species distribution and habitat suitability: The way forward. Diversity and Distributions 29: 39–50. https://doi.org/10.1111/ddi.13644

2022

• Pyšek P., Sádlo J., Chrtek J., Chytrý M., Kaplan Z., Pergl J., Pokorná A., Axmanová I., Čuda J., Doležal J., Dřevojan P., Hejda M., Kočár P., Kortz A., Lososová Z., Lustyk P., Skálová H., Štajerová K., Večeřa M., Vítková M., Wild J. & Danihelka J. (2022) Catalogue of alien plants of the Czech Republic (3rd edition). Preslia 94: 447–577. https://doi.org/10.23855/preslia.2022.447
• Moudrý V., Gdulová K., Gábor L., Šárovcová E., Barták V., Leroy F., Špatenková O., Rocchini D. & Prošek J. (2022) Effects of environmental conditions on ICESat-2 terrain and canopy heights retrievals in Central European mountains. Remote Sensing of Environment 279: 113112. https://doi.org/10.1016/j.rse.2022.113112
• Segar J., Pereira H.M., Baeten L., Bernhardt-Römermann M., De Frenne P., Fernández N., Gilliam F.S., Lenoir J., Ortmann-Ajkai A., Verheyen K., Waller D., Teleki B., Brunet J., Chudomelová M., Decocq G., Dirnböck T., Hédl R., Heinken T., Jaroszewicz B., Kopecký M., Macek M., Máliš F., Naaf T., Orczewska A., Reczynska K., Schmidt W., Šebesta J., Stachurska-Swakoń A., Standovár T., Swierkosz K., Vild O., Wulf M. & Staude I.R. (2022) Divergent roles of herbivory in eutrophying forests. Nature Communications 13: 7837. https://doi.org/10.1038/s41467-022-35282-6
• Man M., Malíček J., Kalčík V., Novotný P., Chobot K. & Wild J. (2022) DaLiBor: Database of Lichens and Bryophytes of the Czech Republic. Preslia 94: 579–605. https://doi.org/10.23855/preslia.2022.579
• Kolář J., Macek M., Tkáč P., Novák D. & Abraham V. (2022) Long-term demographic trends and spatio-temporal distribution of past human activity in Central Europe: Comparison of archaeological and palaeoecological proxies. Quaternary Science Reviews 297: 107834. https://doi.org/10.1016/j.quascirev.2022.107834
• Kaplan Z., Danihelka J., Chrtek J., Prančl J., Grulich V., Jelínek B., Úradníček L., Řepka R., Šmarda P., Vašut R.J. & Wild J. (2022) Distributions of vascular plants in the Czech Republic. Part 11. Preslia 94: 335–427. doi:10.23855/preslia.2022.335
• Rocchini, D.; Lenoir, J.; Asner, G.; Beierkuhnlein, C.; Dalponte, M.; Feilhauer, H.; Foody, G.; Geller, G.; Gillespie, T.; He, K.; Kleijn, D.; Leitão, P.; Malavasi, M.; Moudrý, V.; Müllerová, J.; Nagendra, H.; Normand, S.; Ricotta, C.; Santos, M.; Schaepman, M.; Schmidtlein, S.; Skidmore, A.; Šímová, P.; Townsend, P.; Turner, W.; Ustin, S.; Vihervaara, P.; Wegmann, M.; Féret, J.-B. (2022). The spectral species concept in living color. Journal of Geophysical Research: Biogeosciences. e2022JG007026. doi.org/10.1029/2022JG007026
• Rocchini D., Feilhauer H., Müllerová J., & Schmidtlein S. (2022). Remote sensing for vegetation science: A virtual special issue on its power and challenges. Applied Vegetation Science, 25(3), e12677. doi.org/10.1111/avsc.12677
• Haider S., Lembrechts J. J., McDougall K., Pauchard A., Alexander J. M., Barros A., …… Müllerová J. …… & Seipel T. (2022). Think globally, measure locally: The MIREN standardized protocol for monitoring plant species distributions along elevation gradients. Ecology and Evolution, 12(2), e8590. doi: org/10.1002/ece3.8590
• Fassnacht F. E, Müllerová J., Conti L., Malavasi M. & Schmidtlein S. (2022) About the link between biodiversity and spectral variation. Applied Vegetation Science 25: e12643. doi: 10.1111/avsc.12643
• Novotný P., Brůna J., Chytrý M., Kalčík V., Kaplan Z., Kebert T., Rohn M., Řezníčková M., Štech M. & Wild J. (2022) Pladias platform: Technical description of the database structure. Biodiversity Data Journal 10: doi.org/10.3897/BDJ.10.e80167
• Man M., Wild J., Macek M. & Kopecký M. (2022) Can high-resolution topography and forest canopy structure substitute microclimate measurements? Bryophytes say no. Science of The Total Environment 153377. doi.org/10.1016/j.scitotenv.2022.153377
• Lembrechts J.J., van den Hoogen J., Aalto J., Ashcroft M.B., De Frenne P., Kemppinen J., Kopecký M., Luoto M., Maclean I.M.D., … Brůna J., Hederová L., Macek M., Man M., Wild J., … & Lenoir J. (2022) Global maps of soil temperature. Global Change Biology  28: 3110-3144 doi.org/10.1111/gcb.16060 
• Staude I.R., Pereira H.M., Daskalova G.N., Bernhardt‐Römermann M., Diekmann M., Pauli H., Van Calster H., Vellend M., Bjorkman A.D., Brunet J., De Frenne P., Hédl R., Jandt U., Lenoir J., Myers‐Smith I.H., Verheyen K., Wipf S., Wulf M., Andrews C., Barančok P., Barni E., Benito‐Alonso J., Bennie J., Berki I., Blüml V., Chudomelová M., Decocq G., Dick J., Dirnböck T., Durak T., Eriksson O., Erschbamer B., Graae B.J., Heinken T., Schei F.H., Jaroszewicz B., Kopecký M., Kudernatsch T., Macek M., Malicki M., Máliš F., Michelsen O., Naaf T., Nagel T.A., Newton A.C., Nicklas L., Oddi L., Ortmann‐Ajkai A., Palaj A., Petraglia A., Petřík P., Pielech R., Porro F., Puşcaş M., Reczyńska K., Rixen C., Schmidt W., Standovár T., Steinbauer K., Świerkosz K., Teleki B., Theurillat J., Turtureanu P.D., Ursu T., Vanneste T., Vergeer P., Vild O., Villar L., Vittoz P., Winkler M. & Baeten L. (2022) Directional turnover towards larger‐ranged plants over time and across habitats. Ecology Letters 25: 466-482. https://doi.org/10.1111/ele.13937

2021

• Urfus T., Kopecký M., Urfusová R. & Chrtek J. (2021) Whole genome duplication increases ecological niche breadth of the perennial herb Urtica dioica. Preslia 93: 305–319. doi.org/10.23855/preslia.2021.305
• Riihimäki H., Kemppinen J., Kopecký M., Luoto M. (2021) Topographic Wetness Index as a Proxy for Soil Moisture: The Importance of Flow‐Routing Algorithm and Grid Resolution. Water Resources Research 57. doi.org/10.1029/2021WR029871
• Potůčková M., Kupková L., Červená L., Lysák J., Krause D., Hrázský Z., Březina S. & Müllerová J. (2021). Towards resolving conservation issues through historical aerial imagery: vegetation cover changes in the Central European tundra. Biodiversity and Conservation, 30(12), 3433-3455. doi: 10.1007/s10531-021-02255-y
• Kaplan Z., Danihelka J., Dřevojan P., Řepka R., Koutecký P., Grulich V. & Wild J. (2021) Distributions of vascular plants in the Czech Republic. Part 10. Preslia 93: 255. doi:10.23855/PRESLIA.2021.255
• Macek M., Dvorský M., Klimeš A., Wild J., Doležal J. & Kopecký M. (2021) Midpoint attractor models resolve the mid‐elevation peak in Himalayan plant species richness. Ecography 44: 1665–1677. doi.org/10.1111/ecog.05901
• Haesen S., Lembrechts J.J., Frenne P. De, Lenoir J., Aalto J., Ashcroft M.B., Kopecký M., Luoto M., Maclean I., Nijs I., Niittynen P., Hoogen J. van den, Arriga N., Brůna J., Buchmann N., Čiliak M., Collalti A., Lombaerde E. De, Descombes P., Gharun M., Goded I., Govaert S., Greiser C., Grelle A., Gruening C., Hederová L., Hylander K., Kreyling J., Kruijt B., Macek M., Máliš F., Man M., Manca G., Matula R., Meeussen C., Merinero S., Minerbi S., Montagnani L., Muffler L., Ogaya R., Penuelas J., Plichta R., Estrada M.P.-, Schmeddes J., Shekhar A., Spicher F., Ujházyová M., Vangansbeke P., Weigel R., Wild J., Zellweger F. & Meerbeek K. Van (2021) ForestTemp – ­ Sub- ­ canopy microclimate temperatures of European forests. Global Change Biology 27: 6307–6319. doi.org/10.1111/gcb.15892 
• Müllerová J., Gago X., Bučas M., Company J., Estrany J., Fortesa J., Manfreda S., Michez A., Mokroš M., Paulus G., Tiškus E., Tsiafouli M.A. & Kent R. (2021) Characterizing vegetation complexity with unmanned aerial systems (UAS) – A framework and synthesis. Ecological Indicators 131: 108156. doi.org/10.1016/j.ecolind.2021.108156
• Macek M., Dvorský M., Kopecký M., Wild J. & Doležal J. (2021) Elevational range size patterns of vascular plants in Himalaya contradict Rapoport’s rule. Journal of Ecology 109: 4025-4037. doi.org/10.1111/1365-2745.13772
• Odriozola I., Navrátilová D., Tláskalová P., Klinerová T., Červenková Z., Kohout P., Větrovský T., Čížková P., Starý M. & Baldrian P. (2021) Predictors of soil fungal biomass and community composition in temperate mountainous forests in Central Europe. Soil Biology and Biochemistry 161: 108366. doi: 10.1016/j.soilbio.2021.108366
• Caron M.M., Zellweger F., Verheyen K., Baeten L., Hédl R., Bernhardt‐Römermann M., Berki I., Brunet J., Decocq G., Díaz S., Dirnböck T., Durak T., Heinken T., Jaroszewicz B., Kopecký M., Lenoir J., Macek M., Malicki M., Máliš F., Nagel T.A., Perring M.P., Petřík P., Reczyńska K., Pielech R., Schmidt W., Świerkosz K., Teleki B., Wulf M. & De Frenne P. (2021) Thermal differences between juveniles and adults increased over time in European forest trees. Journal of Ecology 109: 3944-3957. doi.org/10.1111/1365-2745.13773
• Latifi H., Holzwarth S., Skidmore A., Brůna J., Červenka J., Darvishzadeh R., Hais M., Heiden U., Homolová L., Krzystek P., Schneider T., Starý M., Wang T., Müller J. & Heurich M. (2021) A laboratory for conceiving Essential Biodiversity Variables (EBVs)—The ‘Data pool initiative for the Bohemian Forest Ecosystem.’ Methods in Ecology and Evolution 12: 2073–2083. doi.org/10.1111/2041-210X.13695 
• Kašpar V., Hederová L., Macek M., Müllerová J., Prošek J., Surový P., Wild J. & Kopecký M. (2021) Temperature buffering in temperate forests: Comparing microclimate models based on ground measurements with active and passive remote sensing. Remote Sensing of Environment 263: 112522. doi.org/10.1016/j.rse.2021.112522
• Máliš F., Bobek P., Hédl R., Chudomelová M., Petřík P., Ujházy K., Ujházyová M. & Kopecký M. (2021) Historical charcoal burning and coppicing suppressed beech and increased forest vegetation heterogeneity. Journal of Vegetation Science 32:e12923. doi.org/10.1111/jvs.12923
• Depauw L., Perring M.P., Landuyt D., Maes S.L., Blondeel H., De Lombaerde E., Brūmelis G., Brunet J., Closset‐Kopp D., Decocq G., Ouden J. Den, Härdtle W., Hédl R., Heinken T., Heinrichs S., Jaroszewicz B., Kopecký M., Liepiņa I., Macek M., Máliš F., Schmidt W., Smart S.M., Ujházy K., Wulf M. & Verheyen K. (2020) Evaluating structural and compositional canopy characteristics to predict the light-demand-signature of the forest understorey in mixed, semi-natural temperate forests. Applied Vegetation Science 24: avsc.12532 doi.org/10.1111/avsc.12532
• Dolezal J., Jandova V., Macek M. & Liancourt P. (2021) Contrasting biomass allocation responses across ontogeny and stress gradients reveal plant adaptations to drought and cold. Functional Ecology 35:32-42 doi.org/10.1111/1365-2435.13687
• Dolezal J., Jandova V., Macek M., Mudrak O., Altman J., Schweingruber F.H. & Liancourt P. (2021) Climate warming drives Himalayan alpine plant growth and recruitment dynamics. Journal of Ecology 109:179-190 doi.org/10.1111/1365-2745.13459
• Kopecký M., Macek M. & Wild J. (2021) Topographic Wetness Index calculation guidelines based on measured soil moisture and plant species composition. Science of The Total Environment 757: 143785. doi.org/10.1016/j.scitotenv.2020.143785
• Chytrý, M., Danihelka, J., Kaplan, Z., Wild, J., Holubová, D., Novotný, P., Řezníčková, M., Rohn, M., Dřevojan, P., Grulich, V., Klimešová, J., Lepš, J., Lososová, Z., Pergl, J., Sádlo, J., Šmarda, P., Štepánková, P., Tichý, L., Axmanová, I., Bartušková, A., Blažek, P., Chrtek, J., Fischer, F.M., Guo, W.Y., Herben, T., Janovský, Z., Konečná, M., Kühn, I., Moravcová, L., Petřík, P., Pierce, S., Prach, K., Prokešová, H., Štech, M., Tešitel, J., Tešitelová, T., Večeřa, M., Zelený, D., Pyšek, P. (2021). Pladias database of the czech flora and vegetation. Preslia 93, 1–87. doi.org/10.23855/PRESLIA.2021.001
• Vojík, M., Sádlo, J., Petřík, P., Pyšek, P., Man, M., & Pergl, J. (2021). Two faces of parks: Sources of invasion and habitat for threatened native plants. Preslia, 92(4), 353–373. doi.org/10.23855/PRESLIA.2020.353

2020

• Zellweger F., De Frenne P., Lenoir J., Vangansbeke P., Verheyen K., Bernhardt-Römermann M., Baeten L., Hédl R., Berki I., Brunet J., Van Calster H., Chudomelová M., Decocq G., Dirnböck T., Durak T., Heinken T., Jaroszewicz B., Kopecký M., Máliš F., Macek M., Malicki M., Naaf T., Nagel T.A., Ortmann-Ajkai A., Petřík P., Pielech R., Reczyńska K., Schmidt W., Standovár T., Świerkosz K., Teleki B., Vild O., Wulf M. & Coomes D. (2020) Response to Comment on “Forest microclimate dynamics drive plant responses to warming.” Science 370. doi.org/10.1126/science.abd6193
• Čmoková, A., Kolařík, M., Dobiáš, R., Hoyer, L. L., Janouškovcová, H., Kano, R., Kuklová, I., Lysková, P., Machová, L., Maier, T., Mallátová, N., Man, M., Mencl, K., Nenoff, P., Peano, A., Prausová, H., Stubbe, D., Uhrlaß, S., Větrovský, T., Hubka, V. (2020). Resolving the taxonomy of emerging zoonotic pathogens in the Trichophyton benhamiae complex. Fungal Diversity, 104(1), 333–387. doi.org/10.1007/s13225-020-00465-3 
• Perring M.P., De Frenne P., Hertzog L.R., Blondeel H., Depauw L., Maes S.L., Wasof S., Verbeeck H., Verheyen K. & forestREplot (incl. Kopecký M.) (2020) Increasing liana frequency in temperate European forest understories is driven by ivy. Frontiers in Ecology and the Environment. doi.org/10.1002/fee.2266
• Kaplan Z., Danihelka J., Ekrt L., Štech M., Řepka R., Chrtek J., Grulich V., Rotreklová O., Dřevojan P., Šumberová K. & Wild J. (2020) Distributions of vascular plants in the Czech Republic. Part 9. Preslia 92: 255–340. doi:10.23855/preslia.2020.255
• Collins, C., Spasojevic, M., Alados, C., Aronson, E., Benavides, J., Cannone, N., Caviezel, C., Grau, O., Guo, H., Kudo, G., Kuhn, N., Müllerová, J., Phillips, M., Pombubpa, N., Reverchon, F., Shulman, H., Stajich, J., Stokes, A., Weber, S., Diez, J. (2020) Belowground impacts of alpine woody encroachment are determined by plant traits, local climate and soil conditions. Global Change Biology 26: 7112 – 7127; doi: 10.1111/gcb.15340
• Petter G., Mairota P., Albrich K., Bebi P., Brůna J., Bugmann H., Haffenden A., Scheller R.M., Schmatz D.R., Seidl R., Speich M., Vacchiano G. & Lischke H. (2020) How robust are future projections of forest landscape dynamics? Insights from a systematic comparison of four forest landscape models. Environmental Modelling & Software 703: 104844. doi.org/10.1016/j.envsoft.2020.104844 
• Kirschner J., Štěpánek J., Klimeš L., Dvorský M., Brůna J., Macek M. & Kopecký M. (2020) The Taraxacum Flora of Ladakh, with notes on the adjacent regions of the West Himalaya. Phytotaxa 457: 1–409. doi.org/10.11646/phytotaxa.457.1.1
• Zellweger F., De Frenne P., Lenoir J., Vangansbeke P., Verheyen K., Bernhardt-Römermann M., Baeten L., Hédl R., Berki I., Brunet J., Van Calster H., Chudomelová M., Decocq G., Dirnböck T., Durak T., Heinken T., Jaroszewicz B., Kopecký M., Máliš F., Macek M., Malicki M., Naaf T., Nagel T.A., Ortmann-Ajkai A., Petřík P., Pielech R., Reczyńska K., Schmidt W., Standovár T., Świerkosz K., Teleki B., Vild O., Wulf M. & Coomes D. (2020) Forest microclimate dynamics drive plant responses to warming. Science 368: 772–775. doi.org/10.1126/science.aba6880 
• Liancourt P., Song X., Macek M., Santrucek J. & Dolezal J. (2020) Plants’ eye view of temperature governs elevational distributions. Global Change Biology gcb.15129. doi.org/10.1111/gcb.15129
• Lembrechts J.J., Aalto J., Ashcroft M.B., De Frenne P., Kopecký M., Lenoir J., Luoto M., Maclean I.M.D., … Brůna J., Hederová L., Macek M., Man M., Wild J., … & Nijs I. (2020) SoilTemp: a global database of near‐surface temperature. Global Change Biology 26: 6616–6629. gcb.15123. doi.org/10.1111/gcb.15123
• Staude I.R., Waller D.M., Bernhardt-Römermann M., Bjorkman A.D., Brunet J., De Frenne P., Hédl R., Jandt U., Lenoir J., Máliš F., Verheyen K., Wulf M., Pereira H.M., Vangansbeke P., Ortmann-Ajkai A., Pielech R., Berki I., Chudomelová M., Decocq G., Dirnböck T., Durak T., Heinken T., Jaroszewicz B., Kopecký M., Macek M., Malicki M., Naaf T., Nagel T.A., Petřík P., Reczyńska K., Schei F.H., Schmidt W., Standovár T., Świerkosz K., Teleki B., Van Calster H., Vild O. & Baeten L. (2020) Replacements of small- by large-ranged species scale up to diversity loss in Europe’s temperate forest biome. Nature Ecology & Evolution. doi.org/10.1038/s41559-020-1176-8
• Klinerová T. & Dostál P. (2020) Nutrient‐demanding species face less negative competition and plant–soil feedback effects in a nutrient‐rich environment. New Phytologist 225: 1343–1354. doi: 10.1111/nph.16227
• Šipoš J., Chudomelová M., Vild O., Macek M., Kopecký M., Szabó P., & Hédl R. (2020) Plant diversity in deciduous temperate forests reflects interplay among ancient and recent environmental stress. Journal of Vegetation Science 31:53-62: doi.org/10.1111/jvs.12816
• Pergl J., Petřík P., Fleischhans R., Adámek M. & Brůna J. (2020) Telekia speciosa (Schreb.) Baumg. in human made environment: spread and persistence, two sides of the same coin. BioInvasions Records 9: 17–28. doi.org/10.3391/bir.2020.9.1.03
• Vítková M., Sádlo J., Roleček J., Petřík P., Sitzia T., Müllerová J., Pyšek P. (2020): Robinia pseudoacacia dominated vegetation types of Southern Europe: species composition, history, distribution and management. Science of the Total Environment 707, 134857. doi.org/10.1016/j.scitotenv.2019.134857 
• Landuyt, D., Maes, S.L., Depauw, L., Ampoorter, E., Blondeel, H., Perring, M.P., Brūmelis, G., Brunet, J., Decocq, G., Ouden, J., Härdtle, W., Hédl, R., Heinken, T., Heinrichs, S., Jaroszewicz, B., Kirby, K.J., Kopecký, M., Máliš, F., Wulf, M., Verheyen, K., (2020) Drivers of above‐ground understorey biomass and nutrient stocks in temperate deciduous forests. Journal of Ecology: doi.org/10.1111/1365-2745.13318
• Maes, S.L., Perring, M.P., Depauw, L., Bernhardt‐Römermann, M., Blondeel, H., Brūmelis, G., Brunet, J., Decocq, G., den Ouden, J., Govaert, S., Härdtle, W., Hédl, R., Heinken, T., Heinrichs, S., Hertzog, L., Jaroszewicz, B., Kirby, K., Kopecký, M., Landuyt, D., Máliš, F., Vanneste, T., Wulf, M., Verheyen, K., (2020) Plant functional trait response to environmental drivers across European temperate forest understorey communities. Plant Biology: doi.org/10.1111/plb.13082
• Depauw, L., M. P. Perring, D. Landuyt, S. L. Maes, H. Blondeel, E. De Lombaerde, G. Brūmelis, J. Brunet, D. Closset-Kopp, J. Czerepko, G. Decocq, J. Den Ouden, R. Gawryś, W. Härdtle, R. Hédl, T. Heinken, S. Heinrichs, B. Jaroszewicz, M. Kopecký, I. Liepiņa, M. Macek, F. Máliš, W. Schmidt, S. M. Smart, K. Ujházy, M. Wulf, and K. Verheyen. (2020) Light availability and land-use history drive biodiversity and functional changes in forest herb layer communities. Journal of Ecology: doi.org/10.1111/1365-2745.13339

2019

• Větrovský, T., Kohout, P., Kopecký, M., Machac, A., Man, M., Bahnmann, B.D., Brabcová, V., Choi, J., Meszárošová, L., Human, Z.R., Lepinay, C., Lladó, S., López-Mondéjar, R., Martinović, T., Mašínová, T., Morais, D., Navrátilová, D., Odriozola, I., Štursová, M., Švec, K., Tláskal, V., Urbanová, M., Wan, J., Žifčáková, L., Howe, A., Ladau, J., Peay, K.G., Storch, D., Wild, J., Baldrian, P., (2019) A meta-analysis of global fungal distribution reveals climate-driven patterns. Nature Communications. 10, 5142. doi.org/10.1038/s41467-019-13164-8
• Müllerová, J. (2019). UAS for Nature Conservation–Monitoring Invasive Species. In: J. B. Sharma (ed), Applications of Small Unmanned Aircraft Systems: Best Practices and Case Studies, CRC Press, pp. 157-178. ISBN 9780367199241
• Bobek, P., Svobodová-Svitavská, H., Pokorný, P., Šamonil, P., Kuneš, P., Kozáková, R., Abraham, V., Klinerová, T., Švarcová, M.G., Jamrichová, E., Krauseová, E., Wild, J., (2019). Divergent fire history trajectories in Central European temperate forests revealed a pronounced influence of broadleaved trees on fire dynamics. Quaternary Science Reviews. 222, 105865. doi: 10.1016/j.quascirev.2019.105865
• Macek, M., Kopecký M., & Wild J. (2019). Maximum air temperature controlled by landscape topography affects plant species composition in temperate forests. Landscape Ecology 34(11):2541-2556. doi.org/10.1007/s10980-019-00903-x
• Ali, A., Dai, D., Akhtar, K., Teng, M., Yan, Z., Urbina-Cardona, N., Müllerová, J. and Zhou, Z. (2019). Response of understory vegetation, tree regeneration, and soil quality to manipulated stand density in a Pinus massoniana plantation. Global Ecology and Conservation, p.e00775. doi: 10.1016/j.gecco.2019.e00775
• Moudrý, V., Lecours, V., Malavasi, M., Misiuk, B., Gábor, L., Gdulová, K., Šímová, P., Wild, J., (2019). Potential pitfalls in rescaling digital terrain model-derived attributes for ecological studies. Ecological Informatics 54, 100987. doi:10.1016/j.ecoinf.2019.100987
• Kaplan Z., Danihelka J., Chrtek J., Zázvorka J., Kouteck P., Ekrt L., Řepka R., Štěpánková J., Jelínek B., Grulich V., Prančl J. & Wild J. (2019) Distributions of vascular plants in the Czech Republic. Part 8. Preslia 91: 257–368. doi:10.23855/PRESLIA.2019.257
• Zellweger F., Coomes D., Lenoir J., Depauw L., Maes S.L., Wulf M., Kirby K.J., Brunet J., Kopecký M., Máliš F., Schmidt W., Heinrichs S., den Ouden J., Jaroszewicz B., Buyse G., Spicher F., Verheyen K., & De Frenne P. (2019) Seasonal drivers of understorey temperature buffering in temperate deciduous forests across Europe. Global Ecology and Biogeography, doi: 10.1111/geb.12991.
• Knapp M., Seid M., Knappová J., Macek M., & Saska P. (2019). Temporal changes in the spatial distribution of carabid beetles around arable field-woodlot boundaries. Scientific Reports 9:8967. doi.org: 10.1038/s41598-019-45378-7
• Dostál P., Tasevová K. & Klinerová T. (2019) Linking species abundance and overyielding from experimental communities with niche and fitness characteristics. Journal of Ecology 107: 178–189. doi: 10.1111/1365-2745.13005
• Depauw L., Landuyt D., Perring M.P., Blondeel H., Maes S.L., Kopecký M., Máliš F., Vanhellemont M., & Verheyen K. (2019) A general framework for quantifying the effects of land-use history on ecosystem dynamics. Ecological Indicators, doi: doi.org: 10.1016/j.ecolind.2019.05.026
• Wild, J., Kaplan, Z., Danihelka, J., Petřík, P., Chytrý, M., Novotný, P., Rohn M., Šulc V., Brůna J., Chobot K., Ekrt L., Holubová D., Knollová I., Kocián P., Štech M., Štěpánek J. & Zouhar V. (2019). Plant distribution data for the Czech Republic integrated in the Pladias database. Preslia, 91(1), 1–24. doi.org: 10.23855/preslia.2019.001
• Bugmann, H., Seidl, R., Hartig, F., Bohn, F., Brůna, J., Cailleret, M., François, L., Heinke, J., Henrot, A.-J., Hickler, T., Hülsmann, L., Huth, A., Jacquemin, I., Kollas, C., Lasch-Born, P., Lexer, M.J., Merganič, J., Merganičová, K., Mette, T., Miranda, B.R., Nadal-Sala, D., Rammer, W., Rammig, A., Reineking, B., Roedig, E., Sabaté, S., Steinkamp, J., Suckow, F., Vacchiano, G., Wild, J., Xu, C. & Reyer, C.P.O. (2019) Tree mortality submodels drive simulated long-term forest dynamics: assessing 15 models from the stand to global scale. Ecosphere 10 (2), 1–22. doi.org/10.1002/ecs2.2616
• Horčičková E., Brůna J., Vojta J.(2019)  Wild boar (Sus scrofa) increases species diversity of semidry grassland: Field experiment with simulated soil disturbances. Ecology and  Evolution 9(5): 2765-2774. doi.org/10.1002/ece3.4950
• Manfreda, S.; Dvořák, P.; Müllerová, J.; Herban, S.; Vuono, P.; Arranz Justel, J.J.; Perks, M. (2019) Assessing the Accuracy of Digital Surface Models Derived from Optical Imagery Acquired with Unmanned Aerial Systems. Drones, 3(1), 15. doi.org:10.3390/drones3010015
• Dolezal, J., Kopecky, M., Dvorsky, M., Macek, M., Rehakova, K., Capkova, K., Borovec J., Schweingruber, F., Liancourt, P., & Altman, J. (2019) Sink limitation of plant growth determines treeline in the arid Himalayas. Functional Ecology 33 (4): 553:565. doi.org/10.1111/1365-2435.13284
• Wild, J., Kopecký, M., Macek, M., Šanda, M., Jankovec, J., & Haase, T. (2019) Climate at ecologically relevant scales: A new temperature and soil moisture logger for long-term microclimate measurement. Agricultural and Forest Meteorology 268: 40–47. doi.org:10.1016/j.agrformet.2018.12.018
• Dolezal, J., Dvorský M., Kopecký M., Altman J., Mudrák O., Čapková K., Řeháková, K.,  M. Macek, & Liancourt, P. (2019). Functionally distinct assembly of vascular plants colonizing alpine cushions suggests their vulnerability to climate change. Annals of Botany 123 (4): 569-578. doi.org/10.1093/aob/mcy207
• Maes, S. L., Perring, M. P., Vanhellemont, M., Depauw, L., van den Bulcke, J., Brūmelis, G., Brunet, J., Decocq, G., den Ouden, J., Härdtle, W., Hédl, R., Heinken, T., Heinrichs, S., Jaroszewicz, B., Kopecký, M. , Máliš, F., Wulf, M. & Verheyen, K. (2019) Environmental drivers interactively affect individual tree growth across temperate European forests. Global Change Biology, 25, 201–217. doi.org:10.1111/gcb.14493
• Maes S.L., Blondeel H., Perring M.P., Depauw L., Brūmelis G., Brunet J., Decocq G., den Ouden J., Härdtle W., Hédl R., Heinken T., Heinrichs S., Jaroszewicz B., Kirby K., Kopecký M., Máliš F., Wulf M., & Verheyen K. (2019) Litter quality, land-use history, and nitrogen deposition effects on topsoil conditions across European temperate deciduous forests. Forest Ecology and Management, 433, 405–418. doi.org: 10.1016/j.foreco.2018.10.056

2018

• Doležal J., Dvorský M., Börner A., Wild J. & Schweingruber F. H. (2018) Anatomy, Age and Ecology of High Mountain Plants in Ladakh, the Western Himalaya. Springer Verlag, 616 p. https://doi.org/10.1007/978-3-319-78699-5
• Kaplan Z., Danihelka J., Chrtek J., Prančl J., Ducháček M., Ekrt L., Kirschner J., Brabec J., Zázvorka J., Trávníček B., Dřevojan P., Šumberová K., Kocián P., Wild J. & Petřík P. (2018) Distributions of vascular plants in the Czech Republic. Part 7. Preslia 90: 425–531. doi.org/10.23855/preslia.2018.425
• Altman J., Ukhvatkina O. N. , Omelko A. M., Macek M., Plener T., Pejcha V., Cerny T., Petrik P., Srutek M., Song J.-S., Zhmerenetsky A. A., Vozmishcheva A. S., Krestov P. V., Petrenko T. Y., Treydte K., & Dolezal J. (2018) Poleward migration of the destructive effects of tropical cyclones during the 20th century. Proceedings of the National Academy of Sciences 115(45): 11543-11548. doi.org/10.1073/pnas.1808979115
• Martin, F.-M., Müllerová, J., Borgniet, L., Dommanget, F., Breton, V., & Evette, A. (2018) Using Single- and Multi-Date UAV and Satellite Imagery to Accurately Monitor Invasive Knotweed Species. Remote Sensing. 10, 1662. doi.org: 10.3390/rs10101662
• Lepšová-Skácelová O., Fibich P., Wild J. & Lepš J. (2018) Trophic gradient is the main determinant of species and large taxonomic groups representation in phytoplankton of standing water bodies. Ecological Indicators 85: 262–270. doi.org/10.1016/j.ecolind.2017.10.034
• Bruelheide H., Dengler J., Purschke O., Lenoir J., Jiménez-Alfaro B., Hennekens S.M., Botta-Dukát Z., Chytrý M., Field R., Jansen F., Kattge J., Pillar V.D., Schrodt F., Mahecha M.D., Peet R.K., Sandel B., van Bodegom P., Altman J., Alvarez-Dávila E., Arfin Khan M.A.S., Attorre F., Aubin I., Baraloto C., Barroso J.G., Bauters M., Bergmeier E., Biurrun I., Bjorkman A.D., Blonder B., Čarni A., Cayuela L., Černý T., Cornelissen J.H.C., Craven D., Dainese M., Derroire G., De Sanctis M., Díaz S., Doležal J., Farfan-Rios W., Feldpausch T.R., Fenton N.J., Garnier E., Guerin G.R., Gutiérrez A.G., Haider S., Hattab T., Henry G., Hérault B., Higuchi P., Hölzel N., Homeier J., Jentsch A., Jürgens N., Kącki Z., Karger D.N., Kessler M., Kleyer M., Knollová I., Korolyuk A.Y., Kühn I., Laughlin D.C., Lens F., Loos J., Louault F., Lyubenova M.I., Malhi Y., Marcenò C., Mencuccini M., Müller J. V., Munzinger J., Myers-Smith I.H., Neill D.A., Niinemets Ü., Orwin K.H., Ozinga W.A., Penuelas J., Pérez-Haase A., Petřík P., Phillips O.L., Pärtel M., Reich P.B., Römermann C., Rodrigues A. V., Sabatini F.M., Sardans J., Schmidt M., Seidler G., Silva Espejo J.E., Silveira M., Smyth A., Sporbert M., Svenning J.C., Tang Z., Thomas R., Tsiripidis I., Vassilev K., Violle C., Virtanen R., Weiher E., Welk E., Wesche K., Winter M., Wirth C. & Jandt U. (2018) Global trait–environment relationships of plant communities. Nature Ecology and Evolution 2: 1906–1917. doi.org/10.1038/s41559-018-0699-8
• Skálová H., Guo W.Y., Wild J. & Pyšek P. (2017) Ambrosia artemisiifolia in the Czech Republic: History of invasion, current distribution and prediction of future spread. Preslia 89: 1–16. doi.org/10.23855/preslia.2017.001
• Kaplan Z., Danihelka J., Šumberová K., Chrtek J., Rotreklová O., Ekrt L., Štěpánková J., Taraška V., Trávníček B., Prančl J., Ducháček M., Hroneš M., Kobrlová L., Horák D. & Wild J. (2017) Distributions of vascular plants in the Czech Republic. Preslia 89: 333–439. doi.org/10.23855/preslia.2017.333
• Kaplan Z., Danihelka J., Koutecký P., Šumberová K., Ekrt L., Grulich V., Řepka R., Hroudová Z., Štěpánková J., Dvořák V., Dančák M., Dřevojan P. & Wild J. (2017) Distributions of vascular plants in the Czech Republic. Preslia 89: 115–201. doi.org/10.23855/preslia.2017.115
• de Bello F., Fibich P., Zelený D., Kopecký M., Mudrák O., Chytrý M., Pyšek P., Wild J., Michalcová D., Sádlo J., Šmilauer P., Lepš J. & Pärtel M. (2016) Measuring size and composition of species pools: a comparison of dark diversity estimates. Ecology and Evolution 6: 4088–4101. doi: 10.1002/ece3.2169
• Adámek, M., Jankovská, Z., Hadincová, V., Kula, E., & Wild, J. (2018) Drivers of forest fire occurrence in the cultural landscape of Central Europe. Landscape Ecology. doi: s10980-018-0712-2
• Moravcová, L., Pyšek, P., Krinke, L., Müllerová, J., Perglová, I & Pergl, J. (2018) Long-term survival in soil of seed of the invasive herbaceous plant Heracleum mantegazzianum. Preslia 90: 225–234. doi: 10.23855/preslia.2018.225
• Klinerová T., Tasevová K. & Dostál P. (2018) Large generative and vegetative reproduction independently increases global success of perennial plants from Central Europe. Journal of Biogeography 45: 1550–1559. doi: 10.1111/jbi.13236
• Verheyen K., Bažány M., Chećko E., Chudomelová M., Closset-Kopp D., Czortek P., Decocq G., De Frenne P., De Keersmaeker L., Enríquez García C., Fabšičová M., Grytnes J., Hederová L., Hédl R., Heinken T., Schei F.H., Horváth S., Jaroszewicz B., Jermakowicz E., Klinerová T., Kolk J., Kopecký M., Kuras I., Lenoir J., Macek M., Máliš F., Martinessen T.C., Naaf T., Papp L., Papp-Szakály Á., Pech P., Petřík P., Prach J., Reczyńska K., Saetersdal M., Spicher F., Standovár T., Świerkosz K., Szczęśniak E., Tóth Z., Ujházy K., Ujházyová M., Vangansbeke P., Vild O., Wołkowycki D., Wulf M., & Baeten L. (2018) Observer and relocation errors matter in resurveys of historical vegetation plots. Journal of Vegetation Science 29:812-823.doi.org:10.1111/jvs.12673
• Perring M.P., Diekmann M., Midolo G., Schellenberger Costa D., Bernhardt-Römermann M., Otto J.C.J., Gilliam F.S., Hedwall P., Nordin A., Dirnböck T., Simkin S.M., Máliš F., Blondeel H., Brunet J., Chudomelová M., Durak T., De Frenne P., Hédl R., Kopecký M., Landuyt D., Li D., Manning P., Petřík P., Reczyńska K., Schmidt W., Standovár T., Świerkosz K., Vild O., Waller D.M., & Verheyen K. (2018) Understanding context dependency in the response of forest understorey plant communities to nitrogen deposition. Environmental Pollution, doi: 10.1016/j.envpol.2018.07.089
• Kaplan Z., Koutecký P., Danihelka J., Šumberová K., Ducháček M., Štěpánková J., Ekrt L., Grulich V., Řepka R., Kubát K., Mráz P., Wild J., & Brůna J. (2018) Distributions of vascular plants in the Czech Republic. Part 6. Preslia 90: 235–346. doi: 10.23855/preslia.2018.235
• Moudrý V., Lecours V., Gdulová K., Gábor L., Moudrá L., Kropáček J., & Wild J. (2018) On the use of global DEMs in ecological modelling and the accuracy of new bare-earth DEMs. Ecological Modelling 383. doi:10.1016/j.ecolmodel.2018.05.006
• De Lombaerde, E., K. Verheyen, M. P. Perring, M. Bernhardt-Römermann, H. Van Calster, J. Brunet, M. Chudomelová, G. Decocq, M. Diekmann, T. Durak, R. Hédl, T. Heinken, P. Hommel, B. Jaroszewicz, M. Kopecký, J. Lenoir, M. Macek, F. Máliš, F. J. G. Mitchell, T. Naaf, M. Newman, P. Petřík, K. Reczyńska, W. Schmidt, K. Świerkosz, O. Vild, M. Wulf, & L. Baeten. (2018) Responses of competitive understorey species to spatial environmental gradients inaccurately explain temporal changes. Basic and Applied Ecology 30:52-64. doi: 10.1016/j.baae.2018.05.013
• Manfreda, S.; McCabe, M.F.; Miller, P.E.; Lucas, R.; Pajuelo Madrigal, V.; Mallinis, G.; Ben Dor, E.; Helman, D.; Estes, L.; Ciraolo, G.; Müllerová, J.; Tauro, F.; de Lima, M.I.; de Lima, J.L.M.P.; Maltese, A.; Frances, F.; Caylor, K.; Kohv, M.; Perks, M.; Ruiz-Pérez, G.; Su, Z.; Vico, G., & Toth, B. (2018). On the Use of Unmanned Aerial Systems for Environmental Monitoring. Remote Sensing 10: 641. doi: 10.3390/rs10040641
• Vild O., Šipoš J., Szabó P., Macek M., Chudomelová M., Kopecký M., Suchánková S., Houška J., Kotačka M., & Hédl R. (2018) Legacy of historical litter raking in temperate forest plant communities. Journal of Vegetation Science 29:596-606. doi: 10.1111/jvs.12642
• Kolář, J., Macek, M. & Szabó, P. (2018) Using archaeology for population estimates and land-use reconstructions: a perspective from Central Europe. Past Global Changes Magazine 26:30-31 doi.org/10.22498/pages.26.1.30
• Szabó, P., Suchánková S., Křížová L, Kotačka M., Kvardová M., Macek M., Müllerová J., & Brázdil R. (2018) More than trees: The challenges of creating a geodatabase to capture the complexity of forest history. Historical Methods: A Journal of Quantitative and Interdisciplinary History 51(3):175-189. doi: 10.1080/01615440.2018.1444523
• Moravec D., Barták V., Puš V., & Wild J. (2018) Wind turbine impact on near-ground air temperature. Renewable Energy, 123, 627–633. doi: 10.1016/j.renene.2018.02.091
• Le Bagousse-Pinguet Y., Liancourt P., Götzenberger L., de Bello F., Altman J., Brozova V., Chlumska Z., Dvorsky M., Capkova K., Kopecky M., Rehakova K., Riha P., Leps J., & Dolezal J. (2018) A multi-scale approach reveals random phylogenetic patterns at the edge of vascular plant life. Perspectives in Plant Ecology, Evolution and Systematics, 30, 22–30. doi: 10.1016/j.ppees.2017.10.002
• Perring M.P., Bernhardt-Römermann M., Baeten L., Midolo G., Blondeel H., Depauw L., Landuyt D., Maes S.L., De Lombaerde E., Carón M.M., Vellend M., Brunet J., Chudomelová M., Decocq G., Diekmann M., Dirnböck T., Dörfler I., Durak T., De Frenne P., Gilliam F.S., Hédl R., Heinken T., Hommel P., Jaroszewicz B., Kirby K.J., Kopecký M., Lenoir J., Li D., Máliš F., Mitchell F.J.G., Naaf T., Newman M., Petřík P., Reczyńska K., Schmidt W., Standovár T., Świerkosz K., Van Calster H., Vild O., Wagner E.R., Wulf M., & Verheyen K. (2018) Global environmental change effects on plant community composition trajectories depend upon management legacies. Global Change Biology. doi: 10.1111/gcb.14030.
• Prach, J. and Kopecký, M. (2018) Landscape-scale vegetation homogenization in Central European sub-montane forests over the past 50 years. Applied Vegetation Science. doi: 10.1111/avsc.12372
• Röder, M., Latifi, H., Hill, S., Wild, J., Svoboda, M., Brůna, J., Macek, M., Nováková, M. H., Gülch, E., & Heurich, M. (2018). Application of optical unmanned aerial vehicle-based imagery for the inventory of natural regeneration and standing deadwood in post-disturbed spruce forests. International Journal of Remote Sensing, 39(15-16), 5288-5309. doi:10.1080/01431161.2018.1441568
• Lepšová-Skácelová, O., Fibich, P., Wild, J. & Lepš, J., (2018). Trophic gradient is the main determinant of species and large taxonomic groups representation in phytoplankton of standing water bodies. Ecological Indicators 85, 262–270. doi:10.1016/j.ecolind.2017.10.034

2017

• Müllerová, J., Bartaloš, T., Brůna, J., Dvořák, P., & Vítková, M. (2017). Metodika mapování invazních druhů pomocí dálkového průzkumu. Botanický ústav AV ČR, Průhonice. Certified by Ministry of the Environment of the Czech Republic.
• Szabó, P., Šipoš, J., & Müllerová, J. (2017). Township boundaries and the colonization of the Moravian landscape. Journal of Historical Geography 57: 89-99; doi: 10.1016/j.jhg.2017.06.007
• Kotilínek, M., Hiiesalu, I., Košnar, J., Šmilauerová, M., Šmilauer, P., Altman, J., Dvorský, M., Kopecký, M. & Doležal, J. (2017) Fungal root symbionts of high-altitude vascular plants in the Himalayas. Scientific Reports 7, 6562. doi: 10.1038/s41598-017-06938-x
• Řeháková, K., Čapková, K., Dvorský, M., Kopecký, M., Altman, J., Šmilauer, P. & Doležal, J. (2017) Interactions between soil phototrophs and vascular plants in Himalayan cold deserts. Soil Biology and Biochemistry, 1–11. doi.org/10.1016/j.soilbio.2017.05.020
• Seidl, R., Thom, D., Kautz, M., Martin-Benito, D., Peltoniemi, M., Vacchiano, G., Wild, J., Ascoli, D., Petr, M., Honkaniemi, J., Lexer, M.J., Trotsiuk, V., Mairota, P., Svoboda, M., Fabrika, M., Nagel, T.A. & Reyer, C.P.O. (2017). Forest disturbances under climate change. Nature Climate Change 7, 395–402. doi:10.1038/nclimate3303
• Müllerová, J., Brůna, J., Bartaloš, T., Dvořák, P., Vítková, M., & Pyšek, P. (2017). Timing Is Important: Unmanned Aircraft vs. Satellite Imagery in Plant Invasion Monitoring. Frontiers in Plant Science 8: 1–13. 10.3389/fpls.2017.00887
• Dvorský, M., Macek, M., Kopecký, M., Wild, J. & Doležal, J. (2017). Niche asymmetry of vascular plants increases with elevation. Journal of Biogeography 44: 1418-1425, doi: 10.1111/jbi.13001
• Kong, B., Chen, L., Kasahara, Y., Sumida, A., Ono, K., Wild, J., Nagatake, A., Hatano, R. & Hara, T. (2017). Understory Dwarf Bamboo Affects Microbial Community Structures and Soil Properties in a Betula ermanii Forest in Northern Japan. Microbes and Environments 32: 103–111. doi:10.1264/jsme2.ME16154
• Čuda, J., Rumlerová, Z., Brůna, J., Skálová, H. & Pyšek, P. (2017) Floods affect the abundance of invasive Impatiens glandulifera and its spread from river corridors. Diversity and Distributions 23: 342-354. doi:10.1111/ddi.12524.
• Skálová H., Guo W.-Y., Wild J. & Pyšek P. (2017). Ambrosia artemisiifolia in the Czech Republic: history of invasion, current distribution and prediction of future spread. Preslia 89: 1–16,  doi: 10.23855/preslia.2017.001
• Kaplan Z., Danihelka J., Šumberová K., Chrtek J., Rotreklová O., Ekrt L., Štěpánková J., Taraška V., Trávníček B., Prančl J., Ducháček M., Hroneš M., Kobrlová L., Horák D. & Wild J. (2017) Distributions of vascular plants in the Czech Republic. Part 5. Preslia 89: 333–439. doi.org/10.23855/preslia.2017.333
• Kaplan Z., Danihelka J., Koutecký P., Šumberová K., Ekrt L., Grulich V., Řepka R., Hroudová Z., Štěpánková J., Dvořák V., Dančák M., Dřevojan P. & Wild J. (2017) Distributions of vascular plants in the Czech Republic. Part 4. Preslia 89: 115–201. doi.org/10.23855/preslia.2017.115
• Verheyen, K., P. De Frenne, L. Baeten, D. M. Waller, R. Hédl, M. P. Perring, H. Blondeel, J. Brunet, M. Chudomelová, G. Decocq, E. De Lombaerde, L. Depauw, T. Dirnböck, T. Durak, O. Eriksson, F. S. Gilliam, T. Heinken, S. Heinrichs, M. Hermy, B. Jaroszewicz, M. A. Jenkins, S. E. Johnson, K. J. Kirby, M. Kopecký, D. Landuyt, J. Lenoir, D. Li, M. Macek, S. L. Maes, F. Máliš, F. J. G. Mitchell, T. Naaf, G. Peterken, P. Petřík, K. Reczyńska, D. A. Rogers, F. Hø. Schei, W. Schmidt, T. Standovár, K. Świerkosz, K. Ujházy, H. Van Calster, M. Vellend, O. Vild, K. Woods, M. Wulf & M. Bernhardt-Römermann. (2017) Combining Biodiversity Resurveys across Regions to Advance Global Change Research. BioScience 67: 73–83. doi.org/10.1093/biosci/biw150
• Müllerová, J., Bartaloš, T., Brůna, J., Dvořák, P., Vítková, M. (2017) Unmanned aircraft in nature conservation: an example from plant invasions. International Journal of Remote Sensing 38: 2177-2198. doi: 10.1080/01431161.2016.1275059
• Štajerová, K., Šmilauer, P., Brůna, J., Pyšek, P. (2017). Distribution of Invasive Plants in Urban Environment Is Strongly Spatially Structured. Landscape Ecology 32: 681–692. doi: 10.1007/s10980-016-0480-9
• Macek, M.; Wild, J.; Kopecký, M.; Červenka, J.; Svoboda, M.; Zenáhlíková, J.; Brůna, J.; Mosandl, R.; Fischer, A. (2017). Life and death of Picea abies after bark-beetle outbreak: ecological processes driving seedling recruitment. Ecological Applications 27: 156–167. doi: 10.1002/eap.1429
• Vítková M., Müllerová J., Sádlo J., Pergl J., Pyšek P. (2017): Black locust (Robinia pseudoacacia) beloved and despised: A story of an invasive tree in Central Europe. Forest Ecology and Management 384: 287-302; doi: 10.1016/j.foreco.2016.10.057
• Szabó, P.; Kuneš, P.; Svobodová-Svitavská, H.; Gabriela Švarcová, M.; Křížová, L.; Suchánková, S.; Müllerová, J. & Hédl, R. (2017). Using historical ecology to reassess the conservation status of coniferous forests in Central Europe. Conservation Biology 31: 150–160. doi:10.1111/cobi.127632016
• Kapfer, J., Hédl, R., Jurasinski, G., Kopecký, M., Schei, F.H. & Grytnes, J.A. (2017) Resurveying historical vegetation data – opportunities and challenges. Applied Vegetation Science, 1–8. doi.org/10.1111/avsc.12269
• Vild, O., Hédl, R., Kopecký, M., Szabó, P., Suchánková, S. & Zouhar, V. (2017) The paradox of long-term ungulate impact: increase of plant species richness in a temperate forest. Applied Vegetation Science, 1–12. doi.org/10.1111/avsc.12289

2016

• Doležal J., Lehečková E., Sohar K., Dvorský M., Kopecký M., Chlumská Z., Wild J. & Altman J. (2016) Annual and intra-annual growth dynamics of Myricaria elegans shrubs in arid Himalaya. Trees 30: 761–773. https://doi.org/10.1007/s00468-015-1318-9
• Máliš F., Kopecký M., Petřík P., Vladovič J., Merganič J. & Vida T. (2016) Life stage, not climate change, explains observed tree range shifts. Global Change Biology 22: 1904–1914. https://doi.org/10.1111/gcb.13210
• Adámek M., Hadincová V. & Wild J. (2016) Long-term effect of wildfires on temperate Pinus sylvestris forests: Vegetation dynamics and ecosystem resilience. Forest Ecology and Management 380: 285–295. https://doi.org/10.1016/j.foreco.2016.08.051
• Angel R., Conrad R., Dvorský M., Kopecký M., Kotilínek M., Hiiesalu I., Schweingruber F. & Doležal J. (2016) The Root-Associated Microbial Community of the World’s Highest Growing Vascular Plants. Microbial Ecology 72: 394–406. https://doi.org/10.1007/s00248-016-0779-8 
• Dvorský, M., Z. Chlumská, J. Altman, K. Čapková, K. Řeháková, M. Macek, M. Kopecký, P. Liancourt, and J. Doležal (2016) Gardening in the zone of death: an experimental assessment of the absolute elevation limit of vascular plants. Scientific Reports 6: 24440; doi:10.1038/srep24440
• Kolář J., Tkáč P., Macek M. & Szabó P. (2016) Archaeology and historical ecology: the archaeological database of the LONGWOOD ERC project. Archäologisches Korrespondenzblatt 46: 539-554.
• Kolář J., P. Kuneš P., P. Szabó, M. Hajnalová, H. Svobodová-Svitavská, M. Macek & P. Tkáč. (2016) Population and forest dynamics during the Central European Eneolithic (4500-2000 BC). Archaeological and Anthropological Sciences doi:10.1007/s12520-016-0446-5
• Kolář, J., Macek, M., Tkáč, P., and Szabó, P. (2016) Spatio-Temporal Modelling As A Way to Reconstruct Patterns of Past Human Activities. Archaeometry, 58: 513–528. doi: 10.1111/arcm.12182.
• Müllerová, J., Brůna, J., Dvořák, P., Bartaloš, T. & Vítková, M. (2016). Does the Data Resolution/origin Matter? Satellite, Airborne and Uav Imagery to Tackle Plant Invasions. International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, XLI-B7, 903-908. doi: 10.5194/isprsarchives-XLI-B7-903-2016
• Hais, M.; Wild, J.; Berec, L.; Brůna, J.; Kennedy, R.; Braaten, J.; Brož, Z. (2016). Landsat Imagery Spectral Trajectories — Important Variables for Spatially Predicting the Risks of Bark Beetle Disturbance. Remote Sensing 8: 1–22. doi:10.3390/rs8080687
• Pergl J., Sádlo J., Petřík P., Danihelka J., Chrtek J., Hejda M., Moravcová L., Perglová I., Jerová K.Š. & Pyšek P. (2016) Dark side of the fence: Ornamental plants as a source of wild-growing flora in the Czech Republic. Preslia 88: 163–184.
• Kaplan, Z.; Danihelka, J.; Štěpánková, J.; Ekrt, L.; Chrtek, J.; Zázvorka, J.; Grulich, V.; Řepka, R.; Prančl, J.; Ducháček, M.; Kůr, P.; Šumberová, K.; Brůna, J. (2016). Distributions of vascular plants in the Czech Republic. Part 2. Preslia 88, 229–322.
• de Bello, F., Fibich, P., Zelený, D., Kopecký, M., Mudrák, O., Chytrý, M., Pyšek, P., Wild, J., Michalcová, D., Sádlo, J., Šmilauer, P., Lepš, J., Pärtel, M. (2016). Measuring size and composition of species pools: a comparison of dark diversity estimates. Ecology and Evolution 1–14. doi:10.1002/ece3.2169
• Dolezal, J., Dvorsky, M., Kopecky, M., Liancourt, P., Hiiesalu, I., Macek, M., Altman, J., Chlumska, Z., Rehakova, K., Capkova, K., Borovec, J., Mudrak, O., Wild, J., Schweingruber, F. (2016). Vegetation dynamics at the upper elevational limit of vascular plants in Himalaya. Scientific Reports 6, 24881. doi:10.1038/srep24881. doi:10.1038/srep24881
• Müllerová, J., Pejcha, V., Altman, J., Plener, T., Dörner, P., Doležal, J. (2016). Detecting Coppice Legacies from Tree Growth. PLoS ONE 11(1): e0147205. doi:10.1371/journal.pone.0147205.

2015

• Bernhardt-Römermann, M., L. Baeten, D. Craven, P. De Frenne, R. Hédl, J. Lenoir, D. Bert, J. Brunet, M. Chudomelová, G. Decocq, H. Dierschke, T. Dirnböck, I. Dörfler, T. Heinken, M. Hermy, P. Hommel, B. Jaroszewicz, A. Keczyński, D. L. Kelly, K. J. Kirby, M. Kopecký, M. Macek, F. Máliš, M. Mirtl, F. J. G. Mitchell, T. Naaf, M. Newman, G. Peterken, P. Petřík, W. Schmidt, T. Standovár, Z. Tóth, H. Van Calster, G. Verstraeten, J. Vladovič, O. Vild, M. Wulf, and K. Verheyen (2015). Drivers of temporal changes in temperate forest plant diversity vary across spatial scales. Global Change Biology 21: 3726–3737.doi.org/10.1111/gcb.12993
• Kaplan, Z., Danihelka, J., Štěpánková, J., Bureš, P., Zázvorka, J., Hroudová, Z., Ducháček, M., Grulich, V., Řepka, R., Dančák, M., Prančl, J., Šumberová, K., Wild, J., Trávníček, B., (2015). Distributions of vascular plants in the Czech Republic. Part 1. Preslia 87: 417–500. pdf
• Bače, R., Svoboda, M., Janda, P., Morrissey, R. C., Wild, J., Clear, J. L., Čada, V. & Donato, D. C. (2015). Legacy of Pre-Disturbance Spatial Pattern Determines Early Structural Diversity following Severe Disturbance in Montane Spruce Forests. Plos One, 10(9), doi.org/10.1371/journal.pone.0139214
• Fischer, A., Fischer, H. S., Kopecký, M., Macek, M., & Wild, J. (2015). Small changes in species composition despite stand-replacing bark beetle outbreak in Picea abies mountain forests 1. Canadian Journal of Forest Research 44: 1–8. doi.org/10.1139/cjfr-2014-0474
• Petřík P., Fanta J. & Petrtýl M. (2015) It is time to change land use and landscape management in the czech republic. Ecosystem Health and Sustainability 1: 1–6. doi.org/10.1890/15-0016.1
• Dvořák, P., Müllerová, J., Bartaloš, T. & Brůna, J. (2015). Unmanned aerial vehicles for alien plant species detection and monitoring. International Archives of the Photogrammetry, Remote Sensing and Spatial Information Sciences, XL-1/W4, 83-90, doi: 10.5194/isprsarchives-XL-1-W4-83-2015.
• Müllerová J., Hédl R., Szabó P. (2015). Coppice abandonment and its implications for species diversity in forest vegetation. Forest Ecology and Management 343: 88-100; doi:  10.1016/j.foreco.2015.02.003
• Adámek, M., Bobek, P., Hadincová, V., Wild, J., Kopecký, M., (2015). Forest fires within a temperate landscape: a decadal and millennial perspective from a sandstone region in Central Europe. Forest Ecology and Management 336: 81–90. doi:10.1016/j.foreco.2014.10.014
• Kopecký, M., & Macek, M. (2015). Vegetation resurvey is robust to plot location uncertainty. Diversity and Distributions 21: 322–330. doi:10.1111/ddi.12299
• Kuneš, P., Kolář, J., Hajnalová, M., Abraham, V., Svobodová-Svitavská, H., Macek, M., Tkáč, P., and Szabó, P., (2015) The origin of grasslands in the temperate forest zone of east-central Europe: long-term legacy of climate and human impact. Quarternary Science Reviews 116: 15–27. doi: 10.1016/j.quascirev.2015.03.014
• Szabó P., Müllerová J., Suchánková S., Kotačka M. (2015). Intensive woodland management in the Middle Ages: spatial modelling based on archival data. Journal of Historical Geography 48: 1-10; doi: 10.1016/j.jhg.2015.01.005
• Vítková M., Tonika J., Müllerová J. (2015). Black locust – successful invader of a wide range of soil conditions. Science of the Total Environment 505: 315-328; doi: 10.1016/j.scitotenv.2014.09.104
• Černý T., Kopecký M., Petřík P., Song J.-S., Šrůtek M., Valachovič M., Altman J. & Doležal J. (2015) Classification of Korean forests: patterns along geographic and environmental gradients. Applied Vegetation Science 18: 5–22. https://doi.org/10.1111/avsc.12124
• Dvorský M., Altman J., Kopecký M., Chlumská Z., Řeháková K., Janatková K. & Doležal J. (2015) Vascular plants at extreme elevations in eastern Ladakh, northwest Himalayas. Plant Ecology & Diversity 8: 571–584. https://doi.org/10.1080/17550874.2015.1018980

2014

• Prach K., Petřík P., Brož Z. & Song J.-S. (2014) Vegetation Succession on River Sediments along the Nakdong River, South Korea. Folia Geobotanica 49: 507–519. https://doi.org/10.1007/s12224-014-9195-3
• Müllerová J., Szabó P., Hédl R. (2014). The Rise and Fall of Traditional Forest Management in Southern Moravia: A History of the Past 700 Years. Forest Ecology and Management 331: 104–115; doi: 10.1016/j.foreco.2014.07.032
• Herben, T., Rydlová, V., Fér, T., Suda, J., Münzbergová, Z., Wildová, R. and Wild, J. (2014). Phylogenetic signal in growth and reproductive traits and in their plasticity: the Descurainia radiation in the Canary Islands. Botanical Journal of the Linnean Society 174: 384–398. doi: 10.1111/boj.12139
• De Frenne P., Rodríguez-Sánchez F., Coomes D. A., Baeten L., Verstraeten G., Vellend M., Bernhardt-Römermann M., Brown C. D., Brunet J., Cornelis J., Decocq G. M., Dierschke H., Eriksson O., Gilliam F. S., Hédl R., Heinken T., Hermy M., Hommel M., Jenkins M. A., Kelly D. L., Kirby K. J., Mitchell F. J. G., Naaf T., Newman M., Peterken G., Petřík P., Schultz J., Sonnier G., Van Calster H., Waller D. M., Walther G.-R., White P. S., Woods K., Wulf M., Graae B. J. & Verheyen K.(2014). Plant movements and climate warming: intraspecific variation in growth responses to nonlocal soils. New Phytologist 202: 431-441. doi.org/10.1890/15-0016.1
• Jandová K., Klinerová T., Müllerová J., Pyšek P., Pergl J., Cajthaml T. & Dostál P. (2014). Long-term impact of Heracleum mantegazzianum invasion on soil chemical and biological characteristics. Soil Biology & Biochemistry 68:270 – 278. doi: 10.1016/j.soilbio.2013.10.014
• Prach K., Řehounková K., Lencová K., Jírová A., Konvalinková P., Mudrák O., Študent V., Vaněček Z., Tichý L., Petřík P., Šmilauer P. & Pyšek P. (2014). Vegetation succession in restoration of disturbed sites in Central Europe: the direction of succession and species richness across 19 seres. Applied vegetation science, 17(2), 193-200.
• Wild, J., Kopecký, M., Svoboda, M., Zenáhlíková, J., Edwards-Jonášová, M., & Herben, T. (2014). Spatial patterns with memory: tree regeneration after stand-replacing disturbance in Picea abies mountain forests. Journal of Vegetation Science 25(6): 1327-1340. doi:10.1111/jvs.12189

2013

• Dvorský M., Doležal J., Kopecký M., Chlumská Z., Janatková K., Altman J., de Bello F. & Řeháková K. (2013) Testing the Stress-Gradient Hypothesis at the Roof of the World: Effects of the Cushion Plant Thylacospermum caespitosum on Species Assemblages. PLoS ONE 8: e53514. https://doi.org/10.1371/journal.pone.0053514
• Janatková K., Řeháková K., Doležal J., Šimek M., Chlumská Z., Dvorský M. & Kopecký M. (2013) Community structure of soil phototrophs along environmental gradients in arid Himalaya. Environmental Microbiology 15: 2505–2516. https://doi.org/10.1111/1462-2920.12132
• Vild O., Roleček J., Hédl R., Kopecký M. & Utinek D. (2013) Experimental restoration of coppice-with-standards: Response of understorey vegetation from the conservation perspective. Forest Ecology and Management 310: 234–241. https://doi.org/10.1016/j.foreco.2013.07.056
• Kopecký M., Hédl R. & Szabó P. (2013). Non-random extinctions dominate plant community changes in abandoned coppices. Journal of Applied Ecology 50: 79–87. https://doi.org/10.1111/1365-2664.12010
• Jamrichová E., Szabó P., Hédl R., Kuneš P., Bobek P. & Pelánková B. (2013) Continuity and change in the vegetation of a Central European oakwood. The Holocene 23: 46–56. https://doi.org/10.1177/0959683612450200
• Brůna J., Wild J., Svoboda M., Heurich M. & Müllerová J. (2013). Impacts and underlying factors of landscape-scale, historical disturbance of mountain forest identified using archival documents. Forest Ecology and Management 305:294 – 306. 10.1016/j.foreco.2013.06.017
• Černý T., Doležal J., Janeček Š., Šrůtek M., Valachovič M., Petřík P., Altman J., Bartoš M. & Song J.-S. (2013). Environmental correlates of plant diversity in Korean temperate forests. Acta Oecologica 47:37 – 45.
• De Frenne P., Coomes D. A., De Schrijver A., Staelens J., Alexander J. M., Bernhardt-Römermann M., Brunet J., Chabrerie O., Chiarucci A., den Ouden J., Eckstein R. L., Graae B. J., Gruwez R., Hédl R., Hermy M., Kolb A., Mårell A., Mullender S. M., Olsen S. L., Orczewska A., Peterken G., Petřík P., Plue J., Simonson W. D., Tomescu C. V., Vangansbeke P., Verstraeten G., Vesterdal L., Wulf M. & Verheyen K. (2013). Microclimate moderates plant responses to macroclimate warming. Proceedings of the National Academy of Sciences, 110(46), 18561-18565.
• Dostál P., Müllerová J., Pyšek P., Pergl J. & Klinerová T. (2013). The impact of an invasive plant changes over time. Ecology Letters 16:1277 – 1284. doi: 10.1111/ele.12166
• Seiler U. & Wild J. (2013). Historische Waldentwicklung in der Sächsisch-Böhmischen Schweiz Historický vývoj lesa v Českosaském Švýcarsku. Rhombos Verlag 1 – 440.
• Lepší M., Lepší P., Sádlo J., Koutecký P., Vít P. & Petřík P. (2013). Sorbus pauca species nova, the first endemic species of the Sorbus hybrida group for the Czech Republic. Preslia 85:63 – 80.
• Müllerová J., Pergl J. & Pyšek P. (2013). Remote sensing as a tool for monitoring plant invasions: testing the effects of data resolution and image classification approach on the detection of a model plant species Heracleum mantegazzianum (giant hogweed). International Journal of Applied Earth Observation and Geoinformation 25:55 – 65. doi: 10.1016/j.jag.2013.03.004
• Münzbergová Z., Hadincová V., Wild J. & Kindlmannová J. (2013). Variability in the Contribution of Different Life Stages to Population Growth as a Key Factor in the Invasion Success of Pinus strobus. PLOS ONE 8:1 – 12.
• Altman J., Hédl R., Szabó P., Mazůrek P., Riedl V., Müllerová J., Kopecký M. & Doležal J. (2013). Tree-Rings Mirror Management Legacy: Dramatic Response of Standard Oaks to Past Coppicing in Central Europe. PLoS ONE 8: e55770. https://doi.org/10.1371/journal.pone.0055770

More publications could be found on individual author profiles

or in IBOT database: ibot.cas.cz/en/seznam_publikaci_2002_2007