- Bohemian Switzerland 2009-11
- Indikátory pro hodnocení přírodního prostředí
- UAS approach for monitoring of plant invasions (2018-2021)
- Innovative microclimate measurement as a tool for forest management in NP Bohemian Forest (2019-2021)
- DISTUNDRA Greenland 2019
- Microclimate instead of macroclimate (2020-2022)
- Drought and bark beetle – what next? (2020-2022)
- Climate Stations 2011-13
- Fire in postglacial Europe 2014-16
- Alien species in a changing world (2021-22)
- Historical forest development 2009-12
- System for predictive distribution modelling of endangered bryophytes and lichens applied in nature conservation 2017 – 2020
- Forest microclimate 2017-2019
- Indicators for assessment of naturalness
- Trans-boundary mapping of forest ecosystems 2017-2019
- ŠUMLAND 2010-14
- Landscape memory 2017-2019
- UAS for tackling plant invasions (2018-19)
- Expansion of woody plant species into alpine tundra (2017-18)
- Detection and monitoring of invasive species using UAV 2014-17
- Modelling of large scale multi-agents disturbances in mountain spruce forests 2015-2017
- Participated
- COPPICE 2012-15
- Invasion by Heracleum mantegazzianum: the role of time and spatial scales (2008-2011)
- COST Action CA16219 HARMONIOUS (2017-2021)
- Biodiversity maintenance in African savanna (2018 – 2020)
- EFI network FORMASAM (2018-20)
- The quantification of the effects of drought on forest tree species (2020-22)
- Land use, social transformations and woodland in Central European Prehistory (2019-2021)
- Biotic threats to garden monuments: algae, cyanobacteria and invasive plant species (2016-2020)
- Ecological and evolutionary responses of plants to climate change (2017-2019)
- LONGWOOD 2012-16
- Ecological impacts of alien and native plants on vegetation: does origin matter? (2017-2019)
- Humans as nature: anthropogenic legacy in temperate forest ecosystems (2017-2019)
- Spatiotemporal reconstruction of tropical cyclones (2017-2019)
- COST Action FP1304 (PROFOUND) 2014-2018
- PLADIAS 2014-2018
- Plant diversity changes under climate warming 2013-17